Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0772717.1b.4a.2a with 2 members (high mobility group)

Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii /

... /

Tetrapoda / Amniota / Mammalia / Theria / Eutheria / Boreoeutheria / Euarchontoglires / Glires / Rodentia / Hystricomorpha /

Bathyergidae

Completeness score: 1.00

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This HOG has 29 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0772717.1b	148	152	high mobility group
2	HOG:E0772717.1b.4a.2a	84	55	high mobility group
3	HOG:E0779917.3a.2b.1a	19	66	high mobility group protein
4	HOG:E0779917.3a	12	91	high mobility group protein
5	HOG:E0772717.1b.4a	12	62	high mobility group
6	HOG:E0772717.1b.4a.2a.2b	8	4	high mobility group
7	HOG:E0779917.2a	4	5	high mobility group protein
8	HOG:E0772717.1b.2b	4	2	high mobility group
9	HOG:E0772717.1b.2a	4	2	high mobility group
10	HOG:E0772717.1b.1a	4	4	high mobility group
11	HOG:E0772717	4	327	high mobility group
12	HOG:E0779917.3a.2b.1a.2b	2	1	high mobility group protein
13	HOG:E0779917.3a.2b.1a.2a	2	1	high mobility group protein
14	HOG:E0779917.3a.2b	2	70	high mobility group protein
15	HOG:E0779917.2b	2	22	high mobility group protein
16	HOG:E0772717.1b.5b	2	1	high mobility group
17	HOG:E0772717.1b.4b	2	2	high mobility group
18	HOG:E0772717.1b.4a.2a.3b	2	1	high mobility group
19	HOG:E0772717.1b.4a.2a.2a	2	1	high mobility group
20	HOG:E0772717.1b.4a.2a.1b	2	1	high mobility group
21	HOG:E0772717.1b.4a.2a.1a	2	1	high mobility group
22	HOG:E0772717.1b.3b	2	1	high mobility group
23	HOG:E0772717.1b.3a	2	1	high mobility group
24	HOG:E0772717.1b.1a.1b	2	1	high mobility group
25	HOG:E0772717.1b.1a.1a	2	1	high mobility group

Showing 1 to 25 of 29 rows rows per page